Actuellement en préparation ou soumis |
Roslawska, A., Neuman, T., Doppagne, B., Borisov, A. G., Romeo, M., Scheurer, F., Aizpurua, J., & Schull, G. (2021). Mapping Lamb, Stark and Purcell effects at a chromophore-picocavity junction with hyper-resolved fluorescence microscopy. Retrieved October 4, 2024, from https://arxiv.org/abs/2107.01072
Résumé: The interactions between the excited states of a single chromophore with static and dynamic electric fields confined to a plasmonic cavity of picometer dimensions are investigated in a joint experimental and theoretical effort. In this configuration, the spatial extensions of the confined fields are smaller than the one of the molecular exciton, a property that is used to generate fluorescence maps of the chromophores with intra-molecular resolution. Theoretical simulations of the electrostatic and electrodynamic interactions occurring at the chromophore-picocavity junction are able to reproduce and interpret these hyper-resolved fluorescence maps, and reveal the key role played by subtle variations of Purcell, Lamb and Stark effects at the chromophore-picocavity junction.
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Peer-reviewed Publications |
Aguilar-Galindo, F., Borisov, A. G., & Díaz-Tendero, S. (2021). Ultrafast Dynamics of Electronic Resonances in Molecules Adsorbed on Metal Surfaces: A Wave Packet Propagation Approach. J. Chem. Theory Comput., 17(2), 639–654.
Résumé: We present a wave packet propagation-based method to study the electron dynamics in molecular species in the gas phase and adsorbed on metal surfaces. It is a very general method that can be employed to any system where the electron dynamics is dominated by an active electron and the coupling between the discrete and continuum electronic states is of importance. As an example, one can consider resonant molecule–surface electron transfer or molecular photoionization. Our approach is based on a computational strategy allowing incorporating ab initio inputs from quantum chemistry methods, such as density functional theory, Hartree–Fock, and coupled cluster. Thus, the electronic structure of the molecule is fully taken into account. The electron wave function is represented on a three-dimensional grid in spatial coordinates, and its temporal evolution is obtained from the solution of the time-dependent Schrödinger equation. We illustrate our method with an example of the electron dynamics of anionic states localized on organic molecules adsorbed on metal surfaces. In particular, we study resonant charge transfer from the π* orbitals of three vinyl derivatives (acrylamide, acrylonitrile, and acrolein) adsorbed on a Cu(100) surface. Electron transfer between these lowest unoccupied molecular orbitals and the metal surface is extremely fast, leading to a decay of the population of the molecular anion on the femtosecond timescale. We detail how to analyze the time-dependent electronic wave function in order to obtain the relevant information on the system: the energies and lifetimes of the molecule-localized quasistationary states, their resonant wavefunctions, and the population decay channels. In particular, we demonstrate the effect of the electronic structure of the substrate on the energy and momentum distribution of the hot electrons injected into the metal by the decaying molecular resonance.
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Aguilar-Galindo, F., Zapata-Herrera, M., Díaz-Tendero, S., Aizpurua, J., & Borisov, A. G. (2021). Effect of a Dielectric Spacer on Electronic and Electromagnetic Interactions at Play in Molecular Exciton Decay at Surfaces and in Plasmonic Gaps. ACS Photon., 8(12), 3495–3505.
Résumé: The deposition of individual molecules, molecular networks, and molecular layers at surfaces is at the core of surface reactivity, energy harvesting, molecular electronics, and (single) photon sources. Yet, strong adsorbate–substrate interaction on metallic surfaces quenches the excited molecular states and harms many practical applications. Here, we theoretically address the role of a NaCl ionic crystal spacer layer in decoupling an adsorbate from the substrate and therefore changing the interplay between the competing decay channels of an excited molecule driven by electronic and electromagnetic interactions. A quantitative assessment of the corresponding decay rates allows us to establish the minimum thickness of the spacer required for the observation of molecular luminescence from the junction of a scanning tunneling microscope. Our work provides a solid quantitative theoretical basis relevant for several fields of nanotechnology where engineering of ionic crystal spacers allows for adsorbate charge manipulation, reactivity, and photon emission in nanocavities.
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Aguilar-Galindo, F., Borisov, A. G., & Díaz-Tendero, S. (2021). Unveiling the Anisotropic Behavior of Ultrafast Electron Transfer at the Metal/Organic Interface. Appl. Surf. Sci., 554, 149311.
Résumé: Ultrafast electron transfer between adsorbed organic molecules and metal substrates is studied. In particular, the dynamics of the active electron in the nitroethylene anion/metal-copper surface system has been followed in real time using a wave packet propagation approach, allowing an intuitive analysis of the decay of molecule-localized electronic resonances. We find that the strong coupling with the metal substrate leads to an extremely short lifetime (fs) of the molecular resonance. Comparison between the free-electron metal, Cu(100), and Cu(111) surfaces demonstrates that the electronic band structure of the substrate and the shape of the decaying molecular orbital lead to a highly marked anisotropy of the metal continuum states populated by resonant electron transfer from the adsorbate. This finding points at possible anisotropy effects in adsorbate-adsorbate interactions and it is of particular importance in molecular self assembly at metal surfaces, thus opening the way to a rational design of hybrid metal/organic interfaces with tailored electronic properties.
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Aguillon, F., Marinica, D. C., & Borisov, A. G. (2021). Plasmons in Graphene Nanostructures with Point Defects and Impurities. J. Phys. Chem. C, 125(39), 21503–21510.
Résumé: The exceptional electronic and optical properties of graphene are harmed by the unavoidable imperfections of the lattice resulting from mechanical or electronic interaction with the environment. Using a time-dependent approach, we theoretically address the sensitivity of the plasmon modes of graphene nanoflakes to the presence of point vacancy defects and substitutional impurities. We find that the fractions of the defects as low as 10–3 from the total number of carbon atoms in an ideal nanoflake lead to strong broadening of the plasmon resonance in the optical absorption spectrum. In addition to this effect resulting from the elastic and inelastic processes associated with defect-induced scattering and modification of the electronic structure of graphene, we also observe and explain the vacancy and impurity-induced shifts of the plasmon energy. Our work extends the in depth theoretical studies of the optical properties of graphene nanomaterials toward practical situations of nonideal 2D lattices.
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Awali, S., Mestdagh, J. - M., Gaveau, M. - A., Briant, M., Soep, B., Mazet, V., & Poisson, L. (2021). Time-Resolved Observation of the Solvation Dynamics of a Rydberg Excited Molecule Deposited on an Argon Cluster. II. DABCO* at Long Time Delays. J Phys Chem A, 125(20), 4341–4351.
Résumé: The real-time dynamics of DABCO-argon clusters is investigated in a femtosecond pump-probe experiment where the pump excites DABCO to the S1 state within the argon cluster. The probe operates by photoionization and documents the energy and angular distributions of the resulting photoelectrons. The present work complements a previous work from our group [Awali Phys. Chem. Chem. Phys., 2014, 16, 516-526] where this dynamics was probed at short time, up to 4 ps after the pump pulse. Here, the dynamics is followed up to 500 ps. A multiscale dynamics is observed. It includes a jump between two solvation sites (time scale 0.27 ps) followed by the relaxation of the solvation cage excess vibrational energy (time scale 14 ps) and then by that of DABCO (time scale >150 ps). Polarization anisotropy, double polarization, and angular anisotropy effects are reported also. They are interpreted (quantitatively for the former effect) in terms of decoherence of rotational alignment, driven by the overall rotation of the DABCO-argon clusters. A tomographic view of the DABCO excited orbital, provided by the double anisotropy effect, is discussed on a qualitative basis.
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Babaze, A., Esteban, R., Borisov, A. G., & Aizpurua, J. (2021). Electronic Exciton−Plasmon Coupling in a Nanocavity Beyond the Electromagnetic Interaction Picture. Nano Lett., 21(19), 8466–8473.
Résumé: The optical response of a system formed by a quantum emitter and a plasmonic gap nanoantenna is theoretically addressed within the frameworks of classical electrodynamics and the time-dependent density functional theory (TDDFT). A fully quantum many-body description of the electron dynamics within TDDFT allows for analyzing the effect of electronic coupling between the emitter and the nanoantenna, usually ignored in classical descriptions of the optical response. We show that the hybridization between the electronic states of the quantum emitter and those of the metallic nanoparticles strongly modifies the energy, the width, and the very existence of the optical resonances of the coupled system. We thus conclude that the application of a quantum many-body treatment that correctly addresses charge-transfer processes between the emitter and the nanoantenna is crucial to address complex electronic processes involving plasmon–exciton interactions directly impacting optoelectronic applications.
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Basalgète, R., Dupuy, R., Féraud, G., Romanzin, C., Philippe, L., Michaut, X., Michoud, J., Amiaud, L., Lafosse, A., Fillion, J. - H., & Bertin, M. (2021). Complex organic molecules in protoplanetary disks: X-ray photodesorption from methanol-containing ices: I. Pure methanol ices. ASTRONOMY & ASTROPHYSICS, 647, A35.
Résumé: Context. Astrophysical observations show complex organic molecules (COMs) in the gas phase of protoplanetary disks. X-rays emitted from the central young stellar object that irradiate interstellar ices in the disk, followed by the ejection of molecules in the gas phase, are a possible route to explain the abundances observed in the cold regions. This process, known as X-ray photodesorption, needs to be quantified for methanol-containing ices. This Paper I focuses on the case of X-ray photodesorption from pure methanol ices.
Aims. We aim at experimentally measuring X-ray photodesorption yields (in molecule desorbed per incident photon, displayed as molecule/photon for more simplicity) of methanol and its photo-products from pure CH3OH ices, and to shed light on the mechanisms responsible for the desorption process.
Methods. We irradiated methanol ices at 15 K with X-rays in the 525–570 eV range from the SEXTANTS beam line of the SOLEIL synchrotron facility. The release of species in the gas phase was monitored by quadrupole mass spectrometry, and photodesorption yields were derived.
Results. Under our experimental conditions, the CH3OH X-ray photodesorption yield from pure methanol ice is ~10−2 molecule/photon at 564 eV. Photo-products such as CH4, H2CO, H2O, CO2, and CO also desorb at increasing efficiency. X-ray photodesorption of larger COMs, which can be attributed to either ethanol, dimethyl ether, and/or formic acid, is also detected. The physical mechanisms at play are discussed and must likely involve the thermalization of Auger electrons in the ice, thus indicating that its composition plays an important role. Finally, we provide desorption yields applicable to protoplanetary disk environments for astrochemical models.
Conclusions. The X-rays are shown to be a potential candidate to explain gas-phase abundances of methanol in disks. However, more relevant desorption yields derived from experiments on mixed ices are mandatory to properly support the role played by X-rays in nonthermal desorption of methanol (see Paper II).
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Basalgète, R., Dupuy, R., Féraud, G., Romanzin, C., Philippe, L., Michaut, X., Michoud, J., Amiaud, L., Lafosse, A., Fillion, J. - H., & Bertin, M. (2021). Complex organic molecules in protoplanetary disks: X-ray photodesorption from methanol-containing ices: II. Mixed methanol-CO and methanol-H<sub>2</sub>O ices. ASTRONOMY & ASTROPHYSICS, 647, A36.
Résumé: Context. Astrophysical observations show complex organic molecules (COMs) in the gas phase of protoplanetary disks. X-rays emitted from the central young stellar object (YSO) that irradiate interstellar ices in the disk, followed by the ejection of molecules in the gas phase, are a possible route to explain the abundances observed in the cold regions. This process, known as X-ray photodesorption, needs to be quantified for methanol-containing ices.
Aims. We aim at experimentally measuring X-ray photodesorption yields (in molecule desorbed per incident photon, displayed as molecule/photon for more simplicity) of methanol and its photo-products from binary mixed ices: 13CO:CH3OH ice and H2O:CH3OH ice.
Methods. We irradiated these ices at 15 K with X-rays in the 525–570 eV range from the SEXTANTS beam line of the SOLEIL synchrotron facility. The release of species in the gas phase was monitored by quadrupole mass spectrometry, and photodesorption yields were derived.
Results. For 13CO:CH3OH ice, CH3OH X-ray photodesorption yield is estimated to be ∼10−2 molecule/photon at 564 eV. X-ray photodesorption of larger COMs, which can be attributed to either ethanol, dimethyl ether, and/or formic acid, is detected with a yield of ∼10−3 molecule/photon. When methanol is mixed with water, X-ray photodesorption of methanol and of the previous COMs is not detected. X-ray induced chemistry, dominated by low-energy secondary electrons, is found to be the main mechanism that explains these results. We also provide desorption yields that are applicable to protoplanetary disk environments for astrochemical models.
Conclusions. The X-ray emission from YSOs should participate in the enrichment of the protoplanetary disk gas phase with COMs such as methanol in the cold and X-ray dominated regions because of X-ray photodesorption from methanol-containing ices.
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Belkhodja, Y., Coudert, L. H., & Asselin, P. (2021). Rovibrational jet-cooled spectroscopy of the Kr–H2O van der Waals complex in the ν2 bending mode region of H2O. Journal of Molecular Spectroscopy, 381, 111516.
Résumé: Five rovibrational bands of the Kr–H2O complex have been recorded in the ν2 bending region of H2O using a quantum cascade laser coupled to a pulsed slit supersonic jet. Four of them have been unambiguously assigned to the Σ and Π states in v2=1,111,110, and 212 rotational levels of the monomer based on ground state combination differences and similarities with the vibration–rotation tunneling states of Ar–H2O. One of the bands is tentatively assigned to a combination band with two quanta of intermolecular van der Waals stretching mode (νs). Due to the efficient rovibrational cooling in our pulsed supersonic expansion, all observed bands originate from the lowest lying states. Four of them are from the lowest ortho ground state Σe(101) and one of them is from the lowest para ground state Σe(000). The jet-cooled spectra have been analyzed in terms of a nearly free internal rotor model taking into account Coriolis couplings between close lying Σ and Π levels. Molecular parameters for the five upper vibrational states, band origin, rotational and centrifugal distortion constants have been accurately determined. The β parameter describing the Coriolis coupling between the Σ and Π states originating from the (212) state has also been obtained.
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Bocan, G. A., Breiss, H., Szilasi, S., Momeni, A., Staicu Casagrande, E. M., Sánchez, E. A., Gravielle, M. S., & Khemliche, H. (2021). Dynamical effects as a window into van der Waals interactions in grazing-incidence fast He-atom diffraction from KCl(001). Phys. Rev. B, 104, 235401.
Résumé: In this paper we address, both experimentally and theoretically, the very grazing scattering of He atoms off KCl(001) with incidence along the ⟨100⟩ channel. Our theoretical model combines a semiquantum description of the scattering dynamics and a high-precision interaction potential. By means of a thorough analysis of the quantum phase for in-plane scattering and rainbow trajectories, we are able to connect the presence of the physisorption well with the significant enhancements of the corrugation and rainbow angle, relative to the hard corrugated wall predictions. We trace this connection to dynamical effects on the incident and scattered beams due to their traversing of the physisorption well. Finally, we show that the inclusion of van der Waals interactions in the potential improves the theoretical accord with experiments for both the corrugation and the rainbow angle.
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Bouaziz, M., Zhang, W., Tong, Y., Oughaddou, H., Enriquez, H., Mlika, R., Korri-Youssoufi, H., Chen, Z., Xiong, H., Cheng, Y., & Bendounan, A. (2021). Phase transition from Au–Te surface alloy towards tellurene-like monolayer. 2D MATERIALS, 8, 015029.
Résumé: Two-dimensional (2D) chalcogen-based layers will be among the next generation of materials for potential high-tech applications. We present the structural and electronic properties of Tellurium (Te) deposited on the Au(111) surface by high temperature vapor deposition in UHV. We discuss the possible scenarios for the formation of 2D layers ; either AuTe2 metal dichalcogenide, or Au–Te alloy or a single Tellurene layer. Low energy electron diffraction (LEED) and scanning tunneling microscopy (STM) show the existence of several surface reconstructions depending on the Te film thickness in the sub-monolayer regime. We observe the survival of the well-known spin-split Shockley state of the Au(111) surface after Te deposition. The state is shifted to higher binding energy, suggesting a charge transfer at the interface. For 0.33 ML Te, new dispersive bands in the angle-resolved photoemission (ARPES), are due to the strong hybridization between the electronic states of Te and Au. The low intensity and back-folding at the boundaries of the reduced surface Brillouin zone (R-SBZ), prove that these electronic bands represent a naturel 2D electron gas, strongly disturbed by the surface reconstruction. This indicates the fromation of a surface Au–Te alloy. At 0.5 ML Te, a rich, thickness-dependent transition develops from the surface alloy to Tellurene-like structure which excludes the growth of AuTe2 monolayer. Both the surface alloy and the Tellurene monolayer are semiconducting with an occupied-state gap of 0.65 eV.
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Boulet, C., & Hartmann, J. - M. (2021). Toward measurements of the speed-dependence of line-mixing. Journal of Quantitative Spectroscopy and Radiative Transfer, 262, 107510.
Résumé: We theoretically demonstrate that some doublets of NH3 broadened by Ar and heavier atoms may be suitable for the first experimental demonstration of a so-far unstudied problem: The spectral effects of the speed dependence of line-mixing. By using realistic assumptions and spectroscopic data from previous studies, we show that neglecting this process leads to errors on the spectral shape of up to 2% of the peak absorption value. When multispectrum fits are made assuming speed-independent line couplings, the peak-to-dip residuals amplitudes reduce to about 0.5% and 1% for NH3-Ar and -Xe, respectively. The magnitude of the effect is thus comparable to that of the speed dependence of the line broadening on isolated shapes, which has been demonstrated in many experimental studies. It should hence be detectable with high accuracy modern laboratory spectroscopic techniques. With this aim, guidelines and conditions paving the path for future experiments are given.
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Bruckhuisen, J., Dhont, G., Roucou, A., Jabri, A., Bayoudh, H., Tran, T. T., Goubet, M., Martin-Drumel, M. - A., & Cuisset, A. (2021). ntramolecular H-Bond Dynamics of Catechol Investigated by THz High-Resolution Spectroscopy of Its Low-Frequency Modes. molecules, 26(12), 3645.
Résumé: Catechol is an oxygenated aromatic volatile organic compound and a biogenic precursor of secondary organic aerosols. Monitoring this compound in the gas phase is desirable due to its appreciable reactivity with tropospheric ozone. From a molecular point of view, this molecule is attractive since the two adjacent hydroxy groups can interchangeably act as donor and acceptor in an intramolecular hydrogen bonding due to the tunnelling between two symmetrically equivalent structures. Using synchrotron radiation, we recorded a rotationally-resolved Fourier Transform far-infrared (IR) spectrum of the torsional modes of the free and bonded -OH groups forming the intramolecular hydrogen bond. Additionally, the room temperature, pure rotational spectrum was measured in the 70–220 GHz
frequency range using a millimeter-wave spectrometer. The assignment of these molecular transitions was assisted by anharmonic high-level quantum-chemical calculations. In particular, pure rotational lines belonging to the ground and the four lowest energy, vibrationally excited states were assigned. Splitting due to the tunnelling was resolved for the free -OH torsional state. A global fit combining the far-IR and millimeter-wave data provided the spectroscopic parameters of the low-energy far-IR modes, in particular those characterizing the intramolecular hydrogen bond dynamics.
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Buchanan, Z., Lee, K. L. K., Chitarra, O., McCarthy, M. C., Pirali, O., & Martin-Drumel, M. - A. (2021). A rotational and vibrational investigation of phenylpropiolonitrile (C6H5C3N). Journal of Molecular Spectroscopy, 377, 111425.
Résumé: The evidence for benzonitrile (C6H5CN) in the starless cloud core TMC–1 makes high-resolution studies of other aromatic nitriles and their ring-chain derivatives especially timely. One such species is phenylpropiolonitrile (3-phenyl-2-propynenitrile, C6H5C3N), whose spectroscopic characterization is reported here for the first time. The low resolution (0.5 cm−1) vibrational spectrum of C6H5C3N has been recorded at far- and mid-infrared wavelengths (50–3500 cm−1) using a Fourier Transform interferometer, allowing for the assignment of band centers of 14 fundamental vibrational bands. The pure rotational spectrum of the species has been investigated using a chirped-pulse Fourier transform microwave (FTMW) spectrometer (6– 18 GHz), a cavity enhanced FTMW instrument (6–20 GHz), and a millimeter-wave one (75–100 GHz, 141–214 GHz). Through the assignment of more than 6200 lines, accurate ground state spectroscopic constants (rotational, centrifugal distortion up to octics, and nuclear quadrupole hyperfine constants) have been derived from our measurements, with a plausible prediction of the weaker lines through calculations. Interstellar searches for this highly polar species can now be undertaken with confidence since the astronomically most interesting radio lines have either been measured or can be calculated to very high accuracy below 300 GHz.
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Buntine, J. T., Cotter, M. I., Jacovella, U., Liu, C., Watkins, P., Carrascosa, E., Bull, J. N., Weston, L., Muller, G., Scholz, M. S., & Bieske, E. J. (2021). Electronic spectra of positively charged carbon clusters—C2n+ (n = 6–14). The Journal of Chemical Physics, 155, 214302.
Résumé: Electronic spectra are measured for mass-selected C^+{2????}(n = 6–14) clusters over the visible and near-infrared spectral range through resonance enhanced photodissociation of clusters tagged with N2 molecules in a cryogenic ion trap. The carbon cluster cations are generated through laser ablation of a graphite disk and can be selected according to their collision cross section with He buffer gas and their mass prior to being trapped and spectroscopically probed. The data suggest that the C^+{2????}(n = 6–14) clusters have monocyclic structures with bicyclic structures becoming more prevalent for C^+{22} and larger clusters. The C^+{2????} electronic spectra are dominated by an origin transition that shifts linearly to a longer wavelength with the number of carbon atoms and associated progressions involving excitation of ring deformation vibrational modes. Bands for C^+{12}, C^+{16}, C^+{20}, C^+{24}, and C^+{28} are relatively broad, possibly due to rapid non-radiative decay from the excited state, whereas bands for C^+{14}, C^+{18}, C^+{22}, and C^+_{26} are narrower, consistent with slower non-radiative deactivation.
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Chaupard, M., de Frutos, M., & Gref, R. (2021). Deciphering the Structure and Chemical Composition of Drug Nanocarriers: From Bulk Approaches to Individual Nanoparticle Characterization. Part. Part. Syst. Charact., .
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Chitarra, O., Martin-Drumel, M. - A., Buchanan, Z., & Pirali, O. (2021). Rotational and vibrational spectroscopy of 1-cyanoadamantane and 1-isocyanoadamantane. Journal of Molecular Spectroscopy, 378, 111468.
Résumé: Because of their high stability, the presence of diamond-type molecules has long been suspected in the interstellar medium, a hypothesis supported by the extraction of diamond nanocrystal from some meteorites. We report the rotational and vibrational investigation of two polar derivatives of adamantane (C10H16), 1-cyanoadamantane (C10H15–CN) and 1-isocyanoadamantane (C10H15–NC), using room temperature gas phase absorption spectroscopy. Pure rotational spectra have been recorded at millimeter wavelengths (75–220 GHz) while vibrational spectra were obtained in the far- and mid-infrared domains (50–3500 cm−1). Quantum chemical calculations have been performed on these two C3v rotors to support the spectral analysis enabling the assignment, for both species, of more than 7000 pure rotational transitions in the ground (A1 symmetry) and first vibrationally excited (E symmetry) states, and of most of the infrared active bands. The pure rotational lines were fit to their experimental accuracy using a symmetric-top Hamiltonian. Our study provides all necessary information for an active search of these species in space.
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Christodoulou I, B. T., Li X, Patriarche G, Serre C, Marlière C, Gref R. (2021). Degradation Mechanism of Porous Metal-Organic Frameworks by In Situ Atomic Force Microscopy. Nanomaterials (Basel), 11(3), 722.
Résumé: In recent years, Metal-Organic Frameworks (MOFs) have attracted a growing interest for biomedical applications. The design of MOFs should take into consideration the subtle balance between stability and biodegradability. However, only few studies have focused on the MOFs' stability in physiological media and their degradation mechanism. Here, we investigate the degradation of mesoporous iron (III) carboxylate MOFs, which are among the most employed MOFs for drug delivery, by a set of complementary methods. In situ AFM allowed monitoring with nanoscale resolution the morphological, dimensional, and mechanical properties of a series of MOFs in phosphate buffer saline and in real time. Depending on the synthetic route, the external surface presented either well-defined crystalline planes or initial defects, which influenced the degradation mechanism of the particles. Moreover, MOF stability was investigated under different pH conditions, from acidic to neutral. Interestingly, despite pronounced erosion, especially at neutral pH, the dimensions of the crystals were unchanged. It was revealed that the external surfaces of MOF crystals rapidly respond to in situ changes of the composition of the media they are in contact with. These observations are of a crucial importance for the design of nanosized MOFs for drug delivery applications.
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Coudert, L. H., Motiyenko, R. A., Margulès, L., & Tchana Kwabia, F. (2021). The rotation-torsion spectrum of CD2HOH. Journal of Molecular Spectroscopy, 381, 111515.
Résumé: New transitions are reported in the submillimeter wave, terahertz, and far-infrared rotation-torsion spectrum of doubly-deuterated methanol CD2HOH. The newly assigned transitions allow us to spectroscopically characterize torsional states with 0⩽K⩽12 and 0⩽vt⩽2. Three line position analyses are carried out. In the first one, restricted to rotation-torsion lines involving torsional states with 3⩽K⩽12 and vt⩽2, rotational energies are evaluated with a J(J+1) Taylor-type expansion for each torsional state. 4853transitions were accounted for with a unitless standard deviation of 11.4. In the second analysis, 126torsional subband centers are fitted to obtain refined torsional parameters including the hindering potential. In the third analysis, 5911rotation-torsion transitions involving torsional states with vt⩽2, and J⩽26 are reproduced with a unitless standard deviation of 3.2 using a four-dimensional rotation-torsion fitting Hamiltonian.
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Dai, J., Frantzeskakis, E., Aryal, N., Chen, K. - W., Fortuna, F., Rault, J. E., Le Fevre, P., Balicas, L., Miyamoto, K., Okuda, T., Manousakis, E., Baumbach, R. E., & Santander-Syro, A. F. (2021). Experimental Observation and Spin Texture of Dirac Node Arcs in Tetradymite Topological Metals. PHYSICAL REVIEW LETTERS, 126, 196407.
Résumé: We report the observation of a nontrivial spin texture in Dirac node arcs, i.e., novel topological objects formed when Dirac cones of massless particles extend along an open one-dimensional line in momentum space. We find that such states are present in all the compounds of the tetradymite M{2}Te{2}X family (M=Ti, Zr, or Hf and X=P or As) regardless of the weak or strong character of the topological invariant. The Dirac node arcs in tetradymites are thus the simplest possible textbook example of a type-I Dirac system with a single spin-polarized node arc.
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Dai, J., Frantzeskakis, E., Aryal, N., Chen, K. - W., Fortuna, F., Rault, J. E., Le Fevre, P., Balicas, L., Miyamoto, K., Okuda, T., Manousakis, E., Baumbach, R. E., & Santander-Syro, A. F. (2021). Experimental Observation and Spin Texture of Dirac Node Arcs in Tetradymite Topological Metals. PHYSICAL REVIEW LETTERS, 126(19), 196407.
Résumé: We report the observation of a nontrivial spin texture in Dirac node arcs, i.e., novel topological objects formed when Dirac cones of massless particles extend along an open one-dimensional line in momentum space. We find that such states are present in all the compounds of the tetradymite M2Te2X family (M=Ti, Zr, or Hf and X=P or As) regardless of the weak or strong character of the topological invariant. The Dirac node arcs in tetradymites are thus the simplest possible textbook example of a type-I Dirac system with a single spin-polarized node arc.
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Dartois, E., & Langlet, F. (2021). Carbon dioxide clathrate hydrate formation at low temperature. A&A, 652, A74.
Résumé: Context. The formation and presence of clathrate hydrates could influence the composition and stability of planetary ices and comets; they are at the heart of the development of numerous complex planetary models, all of which include the necessary condition imposed by their stability curves, some of which include the cage occupancy or host–guest content and the hydration number, but fewer take into account the kinetics aspects.
Aims. We measure the temperature-dependent-diffusion-controlled formation of the carbon dioxide clathrate hydrate in the 155–210 K range in order to establish the clathrate formation kinetics at low temperature.
Methods. We exposed thin water ice films of a few microns in thickness deposited in a dedicated infrared transmitting closed cell to gaseous carbon dioxide maintained at a pressure of a few times the pressure at which carbon dioxide clathrate hydrate is thermodynamically stable. The time dependence of the clathrate formation was monitored with the recording of specific infrared vibrational modes of CO2 with a Fourier Transform InfraRed spectrometer.
Results. These experiments clearly show a two-step clathrate formation, particularly at low temperature, within a relatively simple geometric configuration. We satisfactorily applied a model combining surface clathration followed by a bulk diffusion–relaxation growth process to the experiments and derived the temperature-dependent-diffusion coefficient for the bulk spreading of clathrate. The derived apparent activation energy corresponding to this temperature-dependent-diffusion coefficient in the considered temperature range is Ea = 24.7 ± 9.7 kJ mol−1. The kinetics parameters favour a possible carbon dioxide clathrate hydrate nucleation mainly in planets or satellites.
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Dartois, E., & Langlet, F. (2021). Ethane clathrate hydrate infrared signatures for solar system remote sensing. Icarus, 357, 114255.
Résumé: Hydrocarbons such as methane and ethane are present in many solar system objects, including comets, moons and planets. The interaction of these hydrocarbons with water ice at low temperatures could lead to the formation of inclusion compounds, such as clathrate hydrates (water based host cages trapping guest molecules), modifying their retention, stability and therefore evolution. The occurrence of clathrate hydrates on solar system surfaces could be established by remote sensing of their spectroscopic signatures. In this study, we measure and analyse ethane clathrate hydrate spectra recorded in the temperature range from 5.3 to 160 K, covering most of the temperature range of interest for solar system objects. Specific infrared band signatures are identified for the ethane encaged guest. We provide evidence that ethane clathrate hydrate outcrops can be detected by remote sensing on the surface of planetary bodies.
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Dartois, E., Chabot, M., Id Barkach, T., Rothard, H., Boduch, P., Augé, B., & Agnihotri, A. N. (2021). Cosmic ray sputtering yield of interstellar ice mantles. A&A, 647, A177.
Résumé: Aims. Cosmic-ray-induced sputtering is one of the important desorption mechanisms at work in astrophysical environments. The chemical evolution observed in high-density regions, from dense clouds to protoplanetary disks, and the release of species condensed on dust grains, is one key parameter to be taken into account in interpretations of both observations and models.
Methods. This study is part of an ongoing systematic experimental determination of the parameters to consider in astrophysical cosmic ray sputtering. As was already done for water ice, we investigated the sputtering yield as a function of ice mantle thickness for the two next most abundant species of ice mantles, carbon monoxide and carbon dioxide, which were exposed to several ion beams to explore the dependence with deposited energy.
Results. These ice sputtering yields are constant for thick films. It decreases rapidly for thin ice films when reaching the impinging ion sputtering desorption depth. An ice mantle thickness dependence constraint can be implemented in the astrophysical modelling of the sputtering process, in particular close to the onset of ice mantle formation at low visual extinctions.
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Debiossac, M., Pan, P., & Roncin, P. (2021). Grazing incidence fast atom diffraction, similarities and differences with thermal energy atom scattering (TEAS). PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 23, 7615–7636.
Résumé: Grazing incidence fast atom diffraction (GIFAD) at surfaces has made rapid progress and has established itself as a surface analysis tool where effective energy E perpendicular of the motion towards the surface is in the same range as that in thermal energy atom scattering (TEAS). To better compare the properties of both techniques, we use the diffraction patterns of helium and neon atoms impinging on a LiF (001) surface as a model system. E-Scan, theta-scan, and phi-scan are presented where the primary beam energy E is varied between a few hundred eV up to five keV, the angle of incidence theta between 0.2 and 2 degrees and the azimuthal angle phi around 360 degrees . The resulting diffraction charts are analyzed in terms of high and low values of effective energy E perpendicular. The former provides high resolution at the positions of the surface atoms and the attached repulsive interaction potentials while the second is sensitive to the attractive forces towards the surface. The recent progress of inelastic diffraction is briefly presented.
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Deppner, C., Herr W, Cornelius, M., Stromberger P, Sternke T, Grzeschik, C., Grote A, Rudolph, J., Herrmann S, Krutzik, M., Wenzlawski A, Corgier R, Charron E, Guery-Odelin, D., Gaaloul N, Lammerzahl, C., Peters A, Windpassinger P, & Rasel, E. M. (2021). Collective-Mode Enhanced Matter-Wave Optics. Phys Rev Lett, (127), 100401.
Résumé: In contrast to light, matter-wave optics of quantum gases deals with interactions even in free space and for ensembles comprising millions of atoms. We exploit these interactions in a quantum degenerate gas as an adjustable lens for coherent atom optics. By combining an interaction-driven quadrupole-mode excitation of a Bose-Einstein condensate (BEC) with a magnetic lens, we form a time-domain matter-wave lens system. The focus is tuned by the strength of the lensing potential and the oscillatory phase of the quadrupole mode. By placing the focus at infinity, we lower the total internal kinetic energy of a BEC comprising 101(37) thousand atoms in three dimensions to 3/2 kB.38-7;+6 pK. Our method paves the way for free-fall experiments lasting ten or more seconds as envisioned for tests of fundamental physics and high-precision BEC interferometry, as well as opens up a new kinetic energy regime.
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Endres, C. P., Martin-Drumel, M. - A., Zingsheim, O., Bonah, L., Pirali, O., Zhang(张天惟), T., Sánchez-Monge, Á., Möller, T., Wehres, N., Schilke, P., McCarthy, M. C., Schlemmer, S., Caselli, P., & Thorwirth, S. (2021). SOLEIL and ALMA views on prototypical organic nitriles: C2H5CN. Journal of Molecular Spectroscopy, 375, 111392.
Résumé: The high resolution vibrational spectrum of ethyl cyanide (C2H5CN) has been investigated in the far-IR using synchrotron-based Fourier transform spectroscopy. The assignment was performed using the Automated Spectral Assignment Procedure (ASAP) allowing accurate rotational energy levels of the four lowest fundamental vibrations of the species, namely the v13=1 @ 205.934099(8)cm−1, v21=1 @ 212.141101(8)cm−1, v20=1 @ 372.635293(15)cm−1, and v12=1 @ 532.699617(16)cm−1 states, to be determined. The analysis not only confirms the applicability of the ASAP in the treatment of (dense) high-resolution infrared spectra but also reveals some of its limitations. Complementary to the infrared study, the pure rotational spectrum of C2H5CN was also studied in selected frequency ranges from 75 to 255GHz. New observations of a prototypical high-mass star-forming region, G327.3–0.6, performed with the Atacama Large Millimeter Array show that vibrational satellites of C2H5CN can be very intense, of order several tens of Kelvin in units of brightness temperature.
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Endres, C. P., Mellau, G. C., Harding, M. E., Martin-Drumel, M. - A., Lichau, H., & Thorwirth, S. (2021). High-resolution infrared study of vinyl acetylene: The ν13 (214 cm−1) and ν18 (304 cm−1) fundamentals. Journal of Molecular Spectroscopy, 379, 111469.
Résumé: The high resolution vibrational spectrum of vinyl acetylene (C2H3CCH) has been investigated in the far infrared region from 180 to 360 cm−1using the Bruker IFS 120 HR spectrometer at Justus-Liebig-Universität, Gießen, Germany. The two energetically lowest vibrational fundamentals ν13 and ν18 at 214 cm−1and 304 cm−1, respectively, were measured at a resolution of 0.0016 cm−1. In addition to the fundamental modes, several hot bands originating from either ν13 or ν18 were observed and analyzed. The spectroscopic analysis was supported by high-level quantum-chemical coupled-cluster calculations and also made use of the Automated Spectral Line Assignment Procedure, ASAP, outlined earlier (Martin-Drumel et al., 2015). In addition to the infrared study, so far unpublished millimeter-wave vibrational satellites that were measured in the course of an earlier study of the pure rotational spectrum of vinyl acetylene in its ground vibrational state (Thorwirth and Lichau, 2003) were added to the data set and are reported here for the first time.
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Frantzeskakis E, Dai J, Bareille C, Rodel TC, Guttler M, Ran S, Kanchanavatee N, Huang K, Pouse N, Wolowiec CT, Rienks EDL, Lejay P, Fortuna F, Maple MB, & Santander-Syro AF. (2021). From hidden order to antiferromagnetism: Electronic structure changes in Fe-doped URu2Si2. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(27), 2020750118.
Résumé: In matter, any spontaneous symmetry breaking induces a phase transition characterized by an order parameter, such as the magnetization vector in ferromagnets, or a macroscopic many-electron wave function in superconductors. Phase transitions with unknown order parameter are rare but extremely appealing, as they may lead to novel physics. An emblematic and still unsolved example is the transition of the heavy fermion compound [Formula: see text] (URS) into the so-called hidden-order (HO) phase when the temperature drops below [Formula: see text] K. Here, we show that the interaction between the heavy fermion and the conduction band states near the Fermi level has a key role in the emergence of the HO phase. Using angle-resolved photoemission spectroscopy, we find that while the Fermi surfaces of the HO and of a neighboring antiferromagnetic (AFM) phase of well-defined order parameter have the same topography, they differ in the size of some, but not all, of their electron pockets. Such a nonrigid change of the electronic structure indicates that a change in the interaction strength between states near the Fermi level is a crucial ingredient for the HO to AFM phase transition.
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Frantzeskakis, E., Dai, J., Bareille, C., Rodel, T. C., Guttler, M., Ran, S., Kanchanavatee, N., Huang, K., Pouse, N., Wolowiec, C. T., Rienks, E. D. L., Lejay, P., Fortuna, F., Maple, M. B., & Santander-Syro, A. F. (2021). From hidden order to antiferromagnetism: Electronic structure changes in Fe-doped URu(2)Si(2). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(27), 750118.
Résumé: In matter, any spontaneous symmetry breaking induces a phase transition characterized by an order parameter, such as the magnetization vector in ferromagnets, or a macroscopic many-electron wave function in superconductors. Phase transitions with unknown order parameter are rare but extremely appealing, as they may lead to novel physics. An emblematic and still unsolved example is the transition of the heavy fermion compound [Formula: see text] (URS) into the so-called hidden-order (HO) phase when the temperature drops below [Formula: see text] K. Here, we show that the interaction between the heavy fermion and the conduction band states near the Fermi level has a key role in the emergence of the HO phase. Using angle-resolved photoemission spectroscopy, we find that while the Fermi surfaces of the HO and of a neighboring antiferromagnetic (AFM) phase of well-defined order parameter have the same topography, they differ in the size of some, but not all, of their electron pockets. Such a nonrigid change of the electronic structure indicates that a change in the interaction strength between states near the Fermi level is a crucial ingredient for the HO to AFM phase transition.
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Gutiérrez-Quintanilla, A., Platakyte, R., Chevalier, M., Crépin, C., & Ceponkus J. (2021). Hidden Isomer of Trifluoroacetylacetone Revealed by Matrix Isolation Infrared and Raman Spectroscopy. J Phys Chem A, 125, 2249–2266.
Résumé: Enol forms of trifluoroacetylacetone (TFacac) isolated in molecular and rare gas matrices were studied using infrared (IR) and Raman spectroscopy. Additionally, calculations using DFT B3LYP and M06-2X as well as MP2 methods were performed in order to investigate the possibility of coexistence of more than one stable enol form isomer of TFacac. Calculations predict that both stable enol isomers of TFacac, 1,1,1-trifluoro-4-hydroxy-3-penten-2-one (1) and 5,5,5-trifluoro-4-hydroxy-3-penten-2-one (2), could coexist, especially in matrices where the room temperature population is frozen, 1 being the most stable one. Raman and IR spectra of TFacac isolated in nitrogen (N2) and carbon monoxide (CO) matrices exhibit clear absorption bands, which cannot be attributed to this single isomer. Their relative band positions and intensity profiles match well with the theoretical calculations of 2. This allows us to confirm that in N2 and CO matrices both isomers exist in similar amounts. Careful examination of the spectra of TFacac in argon, xenon, neon, normal, and para-hydrogen (Ar, Xe, Ne, nH2, and pH2 respectively) matrices revealed that both isomers coexist in all the explored matrices, whereas 2 was not considered in the previous spectroscopic works. The amount of the second isomer (2) in the as-deposited samples depends on the host. The analysis of TFacac spectra in the different hosts and under various experimental conditions allows the vibrational characterization of both chelated isomers. The comparison with theoretical predictions is also investigated.
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Harper, O. J., Gans, B., Loison, J. - C., Garcia, G. A., Hrodmarsson, H. R., & Boyé-Péronne, S. (2021). Photoionization Cross Section of the NH2 Free Radical in the 11.1–15.7 eV Energy Range. The Journal of Physical Chemistry A, 125(13), 2764–2769.
Résumé: The NH2 radical is a key component in many astrophysical environments, both in its neutral and cationic forms, being involved in the formation of complex N-bearing species. To gain insight into the photochemical processes into which it operates and to model accurately the ensuing chemical networks, the knowledge of its photoionization efficiency is required, but no quantitative determination has been carried out so far. Combining a flow-tube H-abstraction radical source, a double imaging photoelectron-photoion spectrometer, and a vacuum-ultraviolet synchrotron excitation, the absolute photoionization cross section of the amino radical has been measured in the present work for the first time at two photon energies: σionNH2(12.7 eV) = 7.8 ± 2.2 Mb and σionNH2(13.2 eV) = 7.8 ± 2.0 Mb. These values have been employed to scale the total ion yield previously recorded by Gibson et al. ( J. Chem. Phys. 1985, 83, 4319−4328). The resulting cross section curve spanning the 11.1–15.7 eV energy range will help in refining the current astrophysical models.
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Hoang, M. - D., Bodin, J. - B., Savina, F., Steinmetz, V., Bignon, J., Durand, P., Clavier, G., Méallet-Renault, R., & Chevalier, A. (2021). “CinNapht” dyes: a new cinnoline/naphthalimide fused hybrid fluorophore. Synthesis, photo-physical study and use for bio-imaging. RSC Adv., 48.
Résumé: Six-membered-diaza ring of cinnoline has been fused on naphthalimide dye to give a donor–acceptor system called CinNapht. This red shifted fluorophore, that can be synthesised in gram scale, exhibits a large Stoke shift and a fluorescence quantum yield up to 0.33. It is also characterized by a strong solvatochromic effect from green to red emission as well and can be used for bio-imaging.
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Holzmeier, F., Joseph, J., Houver, J. C., Lebech, M., Dowek, D., & Lucchese, R. R. (2021). Influence of shape resonances on the angular dependence of molecular photoionization delays. Nat. Commun., .
Résumé: Characterizing time delays in molecular photoionization as a function of the ejected electron emission direction relative to the orientation of the molecule and the light polarization axis provides unprecedented insights into the attosecond dynamics induced by extreme ultraviolet or X-ray one-photon absorption, including the role of electronic correlation and continuum resonant states. Here, we report completely resolved experimental and computational angular dependence of single-photon ionization delays in NO molecules across a shape resonance, relying on synchrotron radiation and time-independent ab initio calculations. The angle-dependent time delay variations of few hundreds of attoseconds, resulting from the interference of the resonant and non-resonant contributions to the dynamics of the ejected electron, are well described using a multichannel Fano model where the time delay of the resonant component is angle-independent. Comparing these results with the same resonance computed in e-NO+ scattering highlights the connection of photoionization delays with Wigner scattering time delays. It is an interesting topic to find the time it takes for an electron to escape an atom or a molecule after photoionization. Here the authors measure the angular dependence of photoionization time delay in the molecular frame and discuss the role of shape resonances.
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Hrodmarsson, H. R., Garcia, G. A., Nahon, L., Loison, J. - C., & Gans, B. (2021). High resolution threshold photoelectron spectrum and autoionization processes of S2 up to 15.0 eV. Journal of Molecular Spectroscopy, 381, 111533.
Résumé: VUV photoionization dynamics of the S2 molecule were re-investigated from threshold up to 15.0 eV, using synchrotron radiation coupled with double imaging photoelectron/photoion coincidence featuring high resolution capabilities. We measured the first threshold photoelectron spectrum of S2 achieving higher resolution than previous literature to derive accurate spectroscopic constants for a few electronic states of the cation including the X2ΠΩg ground state and the a4Πu, b4Σg–, and B2Σg– states. We also recorded the total ion yield for S2 up to a photon energy of 15.0 eV which, combined with the threshold photoelectron spectrum, led to the assignment of various autoionizing Rydberg series.
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Jacovella, U., Rossi, C., Romanzin, C., Alcaraz, C., & Thissen, R. (2021). Structural Elucidation of C6H4+. Using Chemical Reaction Monitoring: Charge Transfer Versus Bond Forming Reactions. ChemPhysChem, 23(5), e202100871.
Résumé: Abstract Mass spectrometry is a powerful tool but when used on its own, without specific activation of ions, the ion mass is the single observable and the structural information is absent. One way of retrieving this information is by using ion?molecule reactions. We propose a general method to disentangle isomeric structures by combining mass spectrometry, tunable synchrotron light source, and quantum-chemistry calculations. We use reactive chemical monitoring technique, which consists in tracking reactivity changes as a function of photoionization energy i.?e. the ionic structure. We illustrate the power of this technique with charge transfer reactions of C6H4+. isomers with allene and propyne and discuss its universal applicability. Furthermore, we emphasize the special reactivity characteristics of distonic ions, where strong charge transfer reactivity but very limited reactivity involving bond formation and following cleavages were observed and attributed to the unconventional ortho-benzyne distonic cation.
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Jahnigen, S., Zehnacker, A., & Vuilleumier, R. (2021). Computation of Solid-State Vibrational Circular Dichroism in the Periodic Gauge. J. Phys. Chem, 12(30), 7213–7220.
Résumé: We introduce a new theoretical formalism to compute solid-state vibrational circular dichroism (VCD) spectra from molecular dynamics simulations. Having solved the origin-dependence problem of the periodic magnetic gauge, we present IR and VCD spectra of (1S,2S)-trans-1,2-cyclohexanediol obtained from first-principles molecular dynamics calculations and nuclear velocity perturbation theory, along with the experimental results. Because the structure model imposes periodic boundary conditions, the common origin of the rotational strength has hitherto been ill-defined and was approximated by means of averaging multiple origins. The new formalism reconnects the periodic model with the finite physical system and restores gauge freedom. It nevertheless fully accounts for nonlocal spatial couplings from the gauge transport term. We show that even for small simulation cells the rich nature of solid-state VCD spectra found in experiments can be reproduced to a very satisfactory level.
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Jouchet, P., Cabriel, C., Bourg, N., Bardou, M., Poüs, C., Fort, E., & Lévêque-Fort, S. (2021). Nanometric axial localization of single fluorescent molecules with modulated excitation. Nat. Photonics, 15, 297.
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Kokoulina, E., Matter, A., Lopez, B., Pantin, E., Ysard, N., Weigelt, G., Habart, E., Varga, J., Jones, A., Meilland, A., Dartois, E., Klarmann, L., Augereau, J. - C., van Boekel, R., Hogerheijde, M., Yoffe, G., Waters, L. B. F. M., Dominik, C., Jaffe, W., Millour, F., Henning, T., Hofmann, K. - H., Schertl, D., Lagarde, S., Petrov, R. G., Antonelli, P., Allouche, F., Berio, P., Robbe-Dubois, S., Ábraham, P., Beckmann, U., Bensberg, A., Bettonvil, F., Bristow, P., Cruzalèbes, P., Danchi, W. C., Dannhoff, M., Graser, U., Heininger, M., Labadie, L., Lehmitz, M., Leinert, C., Meisenheimer, K., Paladini, C., Percheron, I., Stee, P., Woillez, J., Wolf, S., Zins, G., Delbo, M., Drevon, J., Duprat, J., Gámez Rosas, V., Hocdé, V., Hron, J., Hummel, C. A., Isbell, J. W., Leftley, J., Soulain, A., Vakili, F., & Wittkowski, M. (2021). First MATISSE L-band observations of HD 179218. A&A, 652, A61.
Résumé: Context. Carbon is one of the most abundant components in the Universe. While silicates have been the main focus of solid phase studies in protoplanetary discs (PPDs), little is known about the solid carbon content especially in the planet-forming regions (~0.1–10 au). Fortunately, several refractory carbonaceous species present C-H bonds (such as hydrogenated nano-diamond and amorphous carbon as well as polycyclic aromatic hydrocarbons), which generate infrared (IR) features that can be used to trace the solid carbon reservoirs. The new mid-IR instrument MATISSE, installed at the Very Large Telescope Interferometer (VLTI), can spatially resolve the inner regions (~1–10 au) of PPDs and locate, down to the au-scale, the emission coming from carbon grains.
Aims. Our aim is to provide a consistent view on the radial structure, down to the au-scale, as well as basic physical properties and the nature of the material responsible for the IR continuum emission in the inner disk region around HD 179218.
Methods. We implemented a temperature-gradient model to interpret the disk IR continuum emission, based on a multiwavelength dataset comprising a broadband spectral energy distribution and VLTI H-, L-, and N-bands interferometric data obtained in low spectral resolution. Then, we added a ring-like component, representing the carbonaceous L-band features-emitting region, to assess its detectability in future higher spectral resolution observations employing mid-IR interferometry.
Results. Our temperature-gradient model can consistently reproduce our dataset. We confirmed a spatially extended inner 10 au emission in H- and L-bands, with a homogeneously high temperature (~1700 K), which we associate with the presence of stochastically heated nano-grains. On the other hand, the N-band emitting region presents a ring-like geometry that starts at about 10 au with a temperature of 400 K. Moreover, the existing low resolution MATISSE data exclude the presence of aromatic carbon grains (i.e., producing the 3.3 μm feature) in close proximity tothe star (≲1 au). Future medium spectral resolution MATISSE data will confirm their presence at larger distances.
Conclusions. Our best-fit model demonstrates the presence of two separated dust populations: nano-grains that dominate the near- to mid-IR emission in the inner 10 au region and larger grains that dominate the emission outward. The presence of such nano-grains in the highly irradiated inner 10 au region of HD 179218 requires a replenishment process. Considering the expected lifetime of carbon nano-grains from The Heterogeneous dust Evolution Model for Interstellar Solids (THEMIS model), the estimated disk accretion inflow of HD 179218 could significantly contribute to feed the inner 10 au region in nano-grains.Moreover, we also expect a local regeneration of those nano-grains by the photo-fragmentation of larger aggregates.
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Le Barbu-Debus, K., & Zehnacker, A. (2021). Competition between inter and intramolecular hydrogen bond evidenced by vibrational circular dichroism spectroscopy: The case of (1S,2R)-(−)-cis-1-amino-2-indanol. Chirality, 33(12), 858–874.
Résumé: Abstract The infrared (IR) absorption and vibrational circular dichroism (VCD) spectra of an intramolecularly hydrogen-bonded chiral amino-alcohol, (1S,2R)-(−)-cis-1-amino-2-indanol, are studied in DMSO-d6. The spectra are simulated at the density functional theory (DFT) level within the frame of the cluster-in-the-liquid model. Both IR and VCD spectra show a clear signature of the formation of intermolecular hydrogen bonds at the detriment of the intramolecular OH … N interaction present in the isolated molecule. Two solvent molecules are necessary to reproduce the experimental spectra. Whereas the first DMSO molecule captures the main spectral modifications due to hydrogen bond formation between the solute and the solvent, the second DMSO molecule is necessary for a good description of the Boltzmann contribution of the different complexes, based on their Gibbs free energy.
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Li, X., Porcino, M., Qiu, J., Constantin, D., Martineau-Corcos, C., & Gref, R. (2021). Doxorubicin-Loaded Metal-Organic Frameworks Nanoparticles with Engineered Cyclodextrin Coatings: Insights on Drug Location by Solid State NMR Spectroscopy. Nanomaterials (Basel), 11(4), 945.
Résumé: Recently developed, nanoscale metal-organic frameworks (nanoMOFs) functionalized with versatile coatings are drawing special attention in the nanomedicine field. Here we show the preparation of core-shell MIL-100(Al) nanoMOFs for the delivery of the anticancer drug doxorubicin (DOX). DOX was efficiently incorporated in the MOFs and was released in a progressive manner, depending on the initial loading. Besides, the coatings were made of biodegradable gamma-cyclodextrin-citrate oligomers (CD-CO) with affinity for both DOX and the MOF cores. DOX was incorporated and released faster due to its affinity for the coating material. A set of complementary solid state nuclear magnetic resonance (ssNMR) experiments including (1)H-(1)H and (13)C-(27)Al two-dimensional NMR, was used to gain a deep understanding on the multiple interactions involved in the MIL-100(Al) core-shell system. To do so, (13)C-labelled shells were synthesized. This study paves the way towards a methodology to assess the nanoMOF component localization at a molecular scale and to investigate the nanoMOF physicochemical properties, which play a main role on their biological applications.
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Ma, J., Coudert, L. H., Billard, F., Bournazel, M., Lavorel, B., Wu, J., Maroulis, G., Hartmann, J. - M., & Faucher, O. (2021). Echo-assisted impulsive alignment of room-temperature acetone molecules. Physical Review Research, 3, 023192.
Résumé: We experimentally and theoretically investigate the field-free alignment of the asymmetric-top acetone molecule. Our study shows that the production of postpulse aligned molecules in dense samples (0.05–0.2 bar) of room-temperature acetone using a single-pulse excitation can be significantly improved by rotational alignment echoes induced in a two-pulse excitation scheme. We report the observation of fractional echoes that can be used to reveal the nonlinearity of the molecular system. In a proof-of-principle experiment, a prealigned sample of acetone is also used for third-harmonic generation. The analysis of the experimental data with numerical simulations based on quantum and classical models enables the determination of the collisional decay rate of acetone alignment, as well as a test of the static, second-order, electric hyperpolarizabilities of the molecule derived from ab initio calculations presented in this work.
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Ma, Q., & Boulet, C. (2021). Theoretical study of CH3Cl-N2 line shapes in the ν1 band. Line mixing effects in QR doublets and QQk sub-branches. Journal of Quantitative Spectroscopy and Radiative Transfer, 273, 107844.
Résumé: ABSTRACT
Line coupling and line mixing effects of CH3Cl lines in the ν1 band perturbed by N2 have been investigated. We have taken into account the non-diagonality of the exp(−S2) operator within specified line spaces as well as the k-degeneracy of the transitions (due to the double degeneracy of the j,k levels with k ≠ 0). These transitions should be considered as doublets coupled by the line mixing process. A new problem appears in the calculation when the atom-atom potential model is introduced. In order to overcome this difficulty, a pragmatic approach is proposed. Comparisons of theoretically calculated matrix elements of W with measurements of QR(j,k) doublets as well as some QQk sub-branches, which are strongly affected by line mixing, have been made. The results show that the formalism improved in this way leads to rather accurate predictions.
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Mainali, S., Gatti, F., Iouchtchenko, D., Roy, P. - N., & Meyer, H. - D. (2021). Comparison of the multi-layer multi-configuration time-dependent Hartree (ML-MCTDH) method and the density matrix renormalization group (DMRG) for ground state properties of linear rotor chains. J. Chem. Phys., 154, 174106.
Résumé: We demonstrate the applicability of the Multi-Layer Multi-Configuration Time-Dependent Hartree (ML-MCTDH) method to the problem of computing ground states of one-dimensional chains of linear rotors with dipolar interactions. Specifically, we successfully obtain energies, entanglement entropies, and orientational correlations that are in agreement with the Density Matrix Renormalization Group (DMRG), which has been previously used for this system. We find that the entropies calculated by ML-MCTDH for larger system sizes contain non-monotonicity, as expected in the vicinity of a second-order quantum phase transition between ordered and disordered rotor states. We observe that this effect remains when all couplings besides nearest-neighbor are omitted from the Hamiltonian, which suggests that it is not sensitive to the rate of decay of the interactions. In contrast to DMRG, which is tailored to the one-dimensional case, ML-MCTDH (as implemented in the Heidelberg MCTDH package) requires more computational time and memory, although the requirements are still within reach of commodity hardware. The numerical convergence and computational demand of two practical implementations of ML-MCTDH and DMRG are presented in detail for various combinations of system parameters.
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Mau, A., Friedl, K., Leterrier, C., Bourg N, & Leveque-Fort, S. (2021). Fast widefield scan provides tunable and uniform illumination optimizing super-resolution microscopy on large fields. Nat Commun, 12, 3077.
Résumé: Non-uniform illumination limits quantitative analyses of fluorescence imaging techniques. In particular, single molecule localization microscopy (SMLM) relies on high irradiances, but conventional Gaussian-shaped laser illumination restricts the usable field of view to around 40 microm x 40 microm. We present Adaptable Scanning for Tunable Excitation Regions (ASTER), a versatile illumination technique that generates uniform and adaptable illumination. ASTER is also highly compatible with optical sectioning techniques such as total internal reflection fluorescence (TIRF). For SMLM, ASTER delivers homogeneous blinking kinetics at reasonable laser power over fields-of-view up to 200 microm x 200 microm. We demonstrate that ASTER improves clustering analysis and nanoscopic size measurements by imaging nanorulers, microtubules and clathrin-coated pits in COS-7 cells, and beta2-spectrin in neurons. ASTER's sharp and quantitative illumination paves the way for high-throughput quantification of biological structures and processes in classical and super-resolution fluorescence microscopies.
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Mery, M., Uribe, J. D., Flores, M., Arista, N. R., Esaulov, V. A., & Valdés, J. E. (2021). Electronic energy loss and straggling in low energy H+and H2+interaction with silicon films. RADIATION EFFECTS AND DEFECTS IN SOLIDS, 176(1-2), 73–91.
Résumé: The appearance of atomic structures of nanoscopic dimensions, with new and interesting physical properties, requires revisiting various aspects of particle interaction with solid matter. For this purpose in this work we present a study of electronic energy loss of H+ and protons (fragments) from the dissociation of H-2 (+) ions interacting with ultra-thin amorphous silicon films for incident beam energies from 1 to 10 keV/u. We report measurements of energy distributions of transmitted protons and molecular fragments through these films, from which we derive the average energy losses and the energy loss straggling. Our experimental findings turn out to be in good agreement with nonlinear electronic stopping power models and some previous experimental data.
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Mondelain, D., Boulet, C., & Hartmann, J. - M. (2021). The binary absorption coefficients for H2+CO2 mixtures in the 2.12-2.35 µm spectral region determined by CRDS and by semi-empirical calculations. Journal of Quantitative Spectroscopy and Radiative Transfer, 260, 107454.
Résumé: Spectra of CO2+H2 mixtures have been recorded at room temperature by using the cavity ring down technique, for four spectral intervals in the 2.12-2.35 µm CO2 spectral window which is within the (1-0) band of H2. The binary coefficients BCO2−H2+BH2−CO2have been retrieved from the spectra recorded at different pressures after subtraction of the CO2 monomer contribution and of the H2-H2 and CO2-CO2 collision induced absorptions (CIAs). In order to reduce the uncertainties, new measurement of the pure H2 CIA, the main subtracted contribution, at the percent level are also reported. The new set of experimental binary coefficients is compared to values provided by semi-empirical calculations made with the assumption of an isotropic CO2-H2 interaction potential and neglecting the short interaction-range induced electric dipole. This comparison shows the limits of using such a model, which is the only one available, in that spectral region.
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Mundlapati, V. R., Imani, Z., Goldsztejn, G., Gloaguen, E., Brenner, V., Le Barbu-Debus, K., Zehnacker-Rentien, A., Baltaze, J. - P., Robin, S., Mons, M., & Aitken, D. J. (2021). A theoretical and experimental case study of the hydrogen bonding predilection of S-methylcysteine. Amino Acids, 53(4), 621–633.
Résumé: S-containing amino acids can lead to two types of local NH···S interactions which bridge backbone NH sites to the side chain to form either intra- or inter-residue H-bonds. The present work reports on the conformational preferences of S-methyl-l-cysteine, Cys(Me), using a variety of investigating tools, ranging from quantum chemistry simulations, gas-phase UV and IR laser spectroscopy, and solution state IR and NMR spectroscopies, on model compounds comprising one or two Cys(Me) residues. We demonstrate that in gas phase and in low polarity solution, the C- and N-capped model compound for one Cys(Me) residue adopts a preferred C5–C6γ conformation which combines an intra-residue N–H···O=C backbone interaction (C5) and an inter-residue N–H···S interaction implicating the side-chain sulfur atom (C6γ). In contrast, the dominant conformation of the C- and N-capped model compound featuring two consecutive Cys(Me) residues is a regular type I β-turn. This structure is incompatible with concomitant C6γ interactions, which are no longer in evidence. Instead, C5γ interactions occur, that are fully consistent with the turn geometry and additionally stabilize the structure. Comparison with the thietane amino acid Attc, which exhibits a rigid cyclic side chain, pinpoints the significance of side chain flexibility for the specific conformational behavior of Cys(Me).
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Pan, P., Debiossac, M., & Roncin, P. (2021). Polar inelastic profiles in fast-atom diffraction at surfaces. PHYSICAL REVIEW B, 104, 165415.
Résumé: Elastic diffraction of fast atoms at crystal surfaces under grazing incidence θ ≈ 1° has strong similarities with atomic diffraction at thermal energies discovered almost hundred years ago. Here, we focus on the polar scattering profile, which does not exhibit diffraction features but shows well-defined elastic and inelastic components that are found to be essentially independent of the crystallographic axis. The width σθ of the inelastic component is very sensitive to the weak attractive forces responsible for the physisorption. This effect is visible on an energy range almost ten times larger than the depth D of the physisorption well. Experimental data are analyzed using a binary collision model with a Morse potential where the width σθ of the scattering profile is connected to the classical energy loss and is governed by the surface stiffness, defined as the logarithmic derivative of the interaction potential along the surface normal. The main outcome is that the weak attractive forces make the mean surface potential almost twice harder at low energy.
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Parneix, P., Maupin, R., Attal, L., Calvo, F., & Falvo, C. (2021). Extracting vibrational anharmonicities from short driven molecular dynamics trajectories. Theoretical Chemistry Accounts, 140, 40.
Résumé: Anharmonicities provide a wealth of information about the vibrational dynamics, mode coupling and energy transfer within a polyatomic system. In this contribution, we show how driven molecular dynamics trajectories can be used to extract anharmonicity properties under very short times of a few hundreds of vibrational periods, using two exciting fields at- and slightly off-resonance. Detailed analyses on generic quartic potential energy surfaces and applications to various model systems are presented, giving good agreement with perturbation theory. Application to a realistic molecule, cubane (C$$8$$H$$8$$), modelled with a tight-binding quantum force field, further indicates how the method can be applied in practical cases.
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Pérez-Mellor, A., Alata, I., Lepere, V., Spezia, R., & Zehnacker-Rentien, A. (2021). Stereospecific collision-induced dissociation and vibrational spectroscopy of protonated cyclo (Tyr-Pro). International Journal of Mass Spectrometry, 465, 116590.
Résumé: The protonated cyclo (LTyr-LPro) and cyclo (LTyr-DPro) dipeptides based on a diketopiperazine (DKP) ring are studied by tandem mass spectrometry in a Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometer. Collision-induced dissociation (CID) and infrared multiple-photon dissociation (IRMPD) spectroscopy results are interpreted with the aid of quantum chemical calculations and chemical dynamics simulations. All the conformers identified for each diastereomer, denoted c-LLH+ and c-LDH+, respectively, are protonated on the carbonyl group of the tyrosine. The most stable form has an extended structure with the aromatic ring oriented outside the DKP ring; it is stabilized by an OH+…π interaction. Distinct IR signatures are obtained for the extended conformers of c-LLH+ and c-LDH+, which differ by the strength of the OH+…π interaction, much stronger in c-LLH+. Less stable species with the aromatic ring folded over the DKP ring are kinetically trapped in our experimental conditions, but their IR spectrum is identical for c-LLH+ and c-LDH+. The main collision-induced dissociation products of the protonated dipeptides are analyzed using chemical dynamics simulations. More efficient CID is observed for c-LDH+, in particular for the formation of the iminium ion of tyrosine. In contrast to the monomers, the protonated dimers of c-LLH+ and c-LDH+ show identical IR spectra. This is explained in terms of a structure involving a single strong OH+…O interaction between subunits not sensitive to the absolute configuration of the residues, i.e., from a folded protonated monomer to an extended neutral monomer.
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Perez-Mellor, A., Le Barbu-Debus, K., Lepere, V., Alata, I., Spezia, R., & Zehnacker, A. (2021). Structure and collision-induced dissociation of the protonated cyclo His-Phe dipeptide: mechanistic studies and stereochemical effects. EUROPEAN PHYSICAL JOURNAL D, 75(6), 1–7.
Résumé: The role of stereochemical factors on the structure and the fragmentation paths of the protonated cyclic dipeptide cyclo histidine-phenylalanine is studied under ion traps conditions by combining tandem mass spectrometry, laser spectroscopy, quantum chemical calculations and chemical dynamics simulations. Vibrational spectroscopy obtained by Infrared Multiple Photon Dissociation (IRMPD) reveals a small difference between the two diastereomers, c-LLH+ and c-LDH+, arising mainly from ancillary CH center dot center dot center dot pi interactions. In contrast, there is a strong influence of the residues chirality on the collision-induced dissociation (CID) processes. Chemical dynamics simulations rationalize this effect and evidence that proton mobility takes place, allowing isomerization to intermediate cyclic structures that are different for c-LLH+ and c-LDH+, resulting in different barriers to proton mobility. This effect is related to the protonation of the imidazole ring. It contrasts with the minute stereochemical effects observed for other cyclic dipeptides in which the proton is borne by an amide CO.
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Pollet R, & Chin, W. (2021). Reversible Hydration of alpha-Dicarbonyl Compounds from Ab Initio Metadynamics Simulations: Comparison between Pyruvic and Glyoxylic Acids in Aqueous Solutions. J Phys Chem B, 125(11), 2942.
Résumé: Glyoxylic and pyruvic oxoacids are widely available in the atmosphere as gas-phase clusters and particles or in wet aerosols. In aqueous conditions, they undergo interconversion between the unhydrated oxo and gem-diol forms, where two hydroxyl groups replace the carbonyl group. We here examine the hydration equilibrium of glyoxylic and pyruvic acids with first-principles simulations in water at ambient conditions using ab initio metadynamics to reconstruct the corresponding free-energy landscapes. The main results are as follows: (i) our simulations reveal the high conformational diversity of these species in aqueous solutions. (ii) We show that gem-diol is strongly favored in water compared to its oxo counterpart by 29 and 16 kJ/mol for glyoxylic and pyruvic acids, respectively. (iii) From our atomic-scale simulations, we present new insights into the reaction mechanisms with a special focus on hydrogen-bond arrangements and the electronic structure of the transition state.
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Porcino, M., Li, X., Gref, R., & Martineau-Corcos C. (2021). Solid-state NMR spectroscopy as a powerful tool to investigate the location of fluorinated lipids in highly porous hybrid organic-inorganic nanoparticles. Magn Reson Chem, .
Résumé: Nanosized metal-organic frameworks (nanoMOFs) have emerged as a new class of biodegradable and nontoxic nanomaterials of high interest for biomedical applications thanks to the possibility to load large amounts of a wide variety of therapeutic molecules in their porous structure. The surface of the highly porous nanoMOFs is usually engineered to increase their colloidal stability, to tune their interactions with the biological environment, and to allow targeting specific cells or organs. However, the atomic-scale analysis of these complex core-shell materials is highly challenging. In this study, we report the investigation of aluminum-based nanoMOFs containing two fluorinated lipids by solid-state NMR spectroscopy, including (27) Al, (1) H and (19) F MAS NMR. The ensemble of NMR data provides a better understanding of the localization and conformation of the fluorinated lipids inside the pores or on the nanoMOF surface.
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Quertite, K., Enriquez, H., Trcera, N., Tong, Y., Bendounan, A., Mayne, A. J., Dujardin, G., Lagarde, P., El Kenz, A., Benyoussef, A., Dappe, Y. J., Kara, A., & Oughaddou, H. (2021). Silicene Nanoribbons on an Insulating Thin Film. ADVANCED FUNCTIONAL MATERIALS, 31, 2007013.
Résumé: Silicene, a new 2D material has attracted intense research because of the
ubiquitous use of silicon in modern technology. However, producing freestanding
silicene has proved to be a huge challenge. Until now, silicene could be synthesized only on metal surfaces where it naturally forms strong interactions with the metal substrate that modify its electronic properties. Here, the authors report the first experimental evidence of silicene sheet on an insulating NaCl thin film. This work represents a major breakthrough, for the study of the intrinsic properties of silicene, and by extension to other 2D materials that have so far only been grown on metal surfaces.
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Rathore, A., Cipriani, M., Huang, C. - C., Amiaud, L., Dablemont, C., Lafosse, A., Ingolfsson, O., De Simone, D., & De Gendt, S. (2021). Electron-induced fragmentation mechanisms in organic monomers and their implications for photoresist optimization for EUV lithography. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 23, 9228–9234.
Résumé: Secondary electrons generated during the Extreme Ultraviolet Lithography (EUVL) process are predominantly responsible for inducing important patterning chemistry in photoresist films. Therefore, it is crucial to understand the electron-induced fragmentation mechanisms involved in EUV-resist systems to improve their patterning performance. To facilitate this understanding, mechanistic studies were carried out on simple organic EUV-resist monomers, methyl isobutyrate (MIB) and methacrylic acid (MAA), both in the condensed and gas phases. Electron-stimulated desorption (ESD) studies on MIB in the condensed phase showed desorption peaks at around 2 and 9 eV electron energies. The gas-phase study on MIB showed that the monomer followed the dissociative ionization (DI) fragmentation pathway, under single collision conditions, which opened up at electron energies above about 11 eV. No signs of dissociative electron attachment (DEA) were detected for MIB in the gas phase under single collision conditions. However, DEA was an active process in MAA in the gas phase under single collision conditions at around 2 eV, showing that slight modifications of the molecular structures of photoresists may serve to sensitize them to certain electron-induced processes.
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Rojas, J., Duprat, J., Engrand, C., Dartois, E., Delauche, L., Godard, M., Gounelle, M., Carrillo-Sánchez, J. D., Pokorný, P., & Plane, J. M. C. (2021). The micrometeorite flux at Dome C (Antarctica), monitoring the accretion of extraterrestrial dust on Earth. Earth and Planetary Science Letters, 560, 116794.
Résumé: The annual flux of extraterrestrial material on Earth is largely dominated by sub-millimetre particles. The mass distribution and absolute value of this cosmic dust flux at the Earth's surface is however still uncertain due to the difficulty in monitoring both the collection efficiency and the exposure parameter (i.e. the area-time product in m2.yr). In this paper, we present results from micrometeorite collections originating from the vicinity of the CONCORDIA Station located at Dome C (Antarctica), where we performed several independent melts of large volumes of ultra-clean snow. The regular precipitation rate and the exceptional cleanliness of the snow from central Antarctica allow a unique control on both the exposure parameter and the collection efficiency. A total of 1280 unmelted micrometeorites (uMMs) and 808 cosmic spherules (CSs) with diameters ranging from 30 to 350 μm were identified. Within that size range, we measured mass fluxes of 3.0 μg.m−2.yr−1 for uMMs and 5.6 μg.m−2.yr−1 for CSs. Extrapolated to the global flux of particles in the 12-700 μm diameter range, the mass flux of dust at Earth's surface is 5,200±12001500 tons.yr−1 (1,600±500 and 3,600±7001000 tons.yr−1 of uMMs and CSs, respectively). We indicate the statistical uncertainties expected for collections with exposure parameters in the range of 0.1 up to 105 m2.yr. In addition, we estimated the flux of altered and unaltered carbon carried by heated and un-heated particles at Earth's surface. The mass distributions of CSs and uMMs larger than 100 μm are fairly well reproduced by the CABMOD-ZoDy model that includes melting and evaporation during atmospheric entry of the interplanetary dust flux. These numerical simulations suggest that most of the uMMs and CSs originate from Jupiter family comets and a minor part from the main asteroid belt. The total dust mass input before atmospheric entry is estimated at 15,000 tons.yr−1. The existing discrepancy between the flux data and the model for uMMs below 100 μm suggests that small fragile uMMs may evade present day collections, and/or that the amount of small interplanetary particles at 1 AU may be smaller than expected.
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Su, W. - W., Boulet, C., Almodovar, C. A., Ding, Y., Strand, C. L., & Hanson, R. K. (2021). Line Mixing Study on the Fundamental Rovibrational Band of Nitric Oxide near 5.3 μm. Journal of Quantitative Spectroscopy and Radiative Transfer, 278, 107997.
Résumé: In this work, we report quantitative absorbance measurements of nitric oxide (NO) diluted in nitrogen between 1700 to 2000 cm−1 and present three line mixing modeling approaches for the measured spectra. Static cell measurements were taken using a narrow-linewidth, external-cavity quantum-cascade laser at temperatures of 293 K and 802 K and pressures of 20–34 atm. The measured results exhibit considerable deviations from the spectra simulated by a superposition of Lorentzian line profiles due to significant line mixing coupling effects at high-number-density conditions. Our previous work demonstrated a line mixing model based on relaxation matrix theory and the Modified Exponential Gap (MEG) law for the NO R-branch. With expanded access to the P- and Q-branches, the measured data indicated significant line mixing effects between lines of different branches in addition to those within the same branch. An empirical two-scaling-factor inter-branch MEG model is presented that delivers strong agreement across the measured spectra, with residuals less than 2% for the spectrum at 293 K and 34 atm. In addition, the Energy Corrected Sudden (ECS) scaling law is shown to produce reasonable agreement across the measured spectra, excluding the Q-branch. In the Q-branch peak, the ECS model overpredicts the measured data by about 7%. The different line mixing models presented and discussed in this work will improve NO absorption predictions vital for laser absorption applications in high-number-density gas conditions. Future studies may seek to account for inter-spin-split coupling to further improve the ECS application to NO absorption.
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Tafrioucht, A., Rabah, J., Baczko, K., Fensterbank, H., Méallet-Renault, R., Clavier, G., Couty, F., Allard, E., & Wright, K. (2021). Synthesis of a multichromophoric array by sequential CuAAC reactions. Dyes and Pigments, 186, 109031.
Résumé: An easily synthesized α-hydroxy-β-azidotetrazole scaffold was used to build a three dimensional polychromic system. Different chromophores (coumarin, BODIPY and distyryl BODIPY) were incorporated into the structure by using sequential CuAAC reactions to form a series of dyads and a triad. A computational study of the resulting arrays showed that the predominant conformations brought the substituents into close spatial proximity. The triad exhibited FRET behaviour with notably efficient energy transfer values.
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Thees, M., Lee, M. - H., Bouwmeester, R. L., Rezende-Goncalves, P. H., David, E., Zimmers, A., Fortuna, F., Frantzeskakis, E., Vargas, N. M., Kalcheim, Y., Le Fevre, P., Horiba, K., Kumigashira, H., Biermann, S., Trastoy, J., Rozenberg, M. J., Schuller, I. K., & Santander-Syro, A. F. (2021). Imaging the itinerant-to-localized transmutation of electrons across the metal-to-insulator transition in V(2)O(3). SCIENCE ADVANCES, 7(45), eabj1164.
Résumé: In solids, strong repulsion between electrons can inhibit their movement and result in a “Mott” metal-to-insulator transition (MIT), a fundamental phenomenon whose understanding has remained a challenge for over 50 years. A key issue is how the wave-like itinerant electrons change into a localized-like state due to increased interactions. However, observing the MIT in terms of the energy- and momentum-resolved electronic structure of the system, the only direct way to probe both itinerant and localized states, has been elusive. Here we show, using angle-resolved photoemission spectroscopy (ARPES), that in V(2)O(3), the temperature-induced MIT is characterized by the progressive disappearance of its itinerant conduction band, without any change in its energy-momentum dispersion, and the simultaneous shift to larger binding energies of a quasi-localized state initially located near the Fermi level.
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Tong, Y., Berdiyorov, G. R., Sinopoli, A., Madjet, M. E., Esaulov, V. A., & Hamoudi, H. (2021). An estimation on the mechanical stabilities of SAMs by low energy Ar(+) cluster ion collision. SCIENTIFIC REPORTS, 11(1), 12772.
Résumé: The stability of the molecular self-assembled monolayers (SAMs) is of vital importance to the performance of the molecular electronics and their integration to the future electronics devices. Here we study the effect of electron irradiation-induced cross-linking on the stability of self-assembled monolayer of aromatic 5,5'-bis(mercaptomethyl)-2,2'-bipyridine [BPD; HS-CH(2)-(C(5)H(3)N)(2)-CH(2)-SH] on Au (111) single crystal surface. As a refence, we also study the properties of SAMs of electron saturated 1-dodecanethiol [C12; CH(3)-(CH(2))(11)-SH] molecules. The stability of the considered SAMs before and after electron-irradiation is studied using low energy Ar(+) cluster depth profiling monitored by recording the X-ray photoelectron spectroscopy (XPS) core level spectra and the UV-photoelectron spectroscopy (UPS) in the valance band range. The results indicate a stronger mechanical stability of BPD SAMs than the C12 SAMs. The stability of BPD SAMs enhances further after electron irradiation due to intermolecular cross-linking, whereas the electron irradiation results in deterioration of C12 molecules due to the saturated nature of the molecules. The depth profiling time of the cross-linked BPD SAM is more than 4 and 8 times longer than the profiling time obtained for pristine and BPD and C12 SAMs, respectively. The UPS results are supported by density functional theory calculations, which show qualitative agreement with the experiment and enable us to interpret the features in the XPS spectra during the etching process for structural characterization. The obtained results offer helpful options to estimate the structural stability of SAMs which is a key factor for the fabrication of molecular devices.
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Vallejo Bustamante, J., Wu, N. J., Fermon, C., Pannetier-Lecoeur, M., Wakamura, T., Watanabe, K., Taniguchi, T., Pellegrin, T., Bernard, A., Daddinounou, S., Bouchiat, V., Gueron, S., Ferrier, M., Montambaux, G., & Bouchiat, H. (2021). Detection of graphene's divergent orbital diamagnetism at the Dirac point. SCIENCE, 374(6573), 1399–1402.
Résumé: The electronic properties of graphene have been intensively investigated over the past decade. However, the singular orbital magnetism of undoped graphene, a fundamental signature of the characteristic Berry phase of graphene’s electronic wave functions, has been challenging to measure in a single flake. Using a highly sensitive giant magnetoresistance (GMR) sensor, we have measured the gate voltage–dependent magnetization of a single graphene monolayer encapsulated between boron nitride crystals. The signal exhibits a diamagnetic peak at the Dirac point whose magnetic field and temperature dependences agree with long-standing theoretical predictions. Our measurements offer a means to monitor Berry phase singularities and explore correlated states generated by the combined effects of Coulomb interactions, strain, or moiré potentials.
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Voute A, Gatti F, Moller KB, & Henriksen NE. (2021). Femtochemistry of bimolecular reactions from weakly bound complexes: computational study of the H + H'OD --> H'OH + D or HOD + H' exchange reactions. Phys Chem Chem Phys, (23), 27207–27226.
Résumé: A full-dimensional wavepacket propagation describing the bimolecular exchange reactions H + H'OD --> H'OH + D or HOD + H' initiated by photolysis of HCl in the hydrogen-bound complex (HCl)---(HOD) is reported. The dynamics of this reaction is carried out with the MCTDH method on an ab initio potential energy surface (PES) of H3O and the initial state is derived from the ground state wavefunction of the complex obtained by relaxation on its own electronic ground state ab initio PES. The description of the system makes use of polyspherical coordinates parametrizing a set of Radau and Jacobi vectors. The calculated energy- and time-resolved reaction probabilities show, owing to the large collision energies at play stemming from the (almost full) photolysis of HCl, that the repulsion between oxygen in the H'OD molecule and the incoming hydrogen atom is the main feature of the collision and leads to non-reactive scattering. No abstraction reaction products are observed. However, both exchange processes are still observable, with a preference in O-H' bond dissociation over that of O-D. The selectivity is reversed upon vibrational pre-excitation of the O-D stretching mode in the H'OD molecule. It is shown that, after the collision, the hydrogen atom of HCl does most likely not encounter the almost stationary chlorine atom again but we also consider the limit case where the H atom is forced to collide multiple times against H'OD as a result of being pushed back by the Cl atom.
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Wakelam, V., Dartois, E., Chabot, M., Spezzano, S., Navarro-Almaida, D., Loison, J. - C., & Fuente, A. (2021). Efficiency of non-thermal desorptions in cold-core conditions. A&A, 652, A63.
Résumé: Context. Under cold conditions in dense cores, gas-phase molecules and atoms are depleted from the gas-phase to the surface of interstellar grains. Considering the time scales and physical conditions within these cores, a portion of these molecules has to be brought back into the gas-phase to explain their observation by milimeter telescopes.
Aims. We tested the respective efficiencies of the different mechanisms commonly included in the models (photo-desorption, chemical desorption, and cosmic-ray-induced whole-grain heating). We also tested the addition of sputtering of ice grain mantles via a collision with cosmic rays in the electronic stopping power regime, leading to a localized thermal spike desorption that was measured in the laboratory.
Methods. The ice sputtering induced by cosmic rays has been added to the Nautilus gas-grain model while the other processes were already present. Each of these processes were tested on a 1D physical structure determined by observations in TMC1 cold cores. We focused the discussion on the main ice components, simple molecules usually observed in cold cores (CO, CN, CS, SO, HCN, HC3N, and HCO+), and complex organic molecules (COMs such as CH3OH, CH3CHO, CH3OCH3, and HCOOCH3). The resulting 1D chemical structure was also compared to methanol gas-phase abundances observed in these cores.
Results. We found that all species are not sensitive in the same way to the non-thermal desorption mechanisms, and the sensitivity also depends on the physical conditions. Thus, it is mandatory to include all of them. Chemical desorption seems to be essential in reproducing the observations for H densities smaller than 4 × 104 cm−3, whereas sputtering is essential above this density. The models are, however, systematically below the observed methanol abundances. A more efficient chemical desorption and a more efficient sputtering could better reproduce the observations.
Conclusions. In conclusion, the sputtering of ices by cosmic-rays collisions may be the most efficient desorption mechanism at high density (a few 104 cm−3 under the conditions studied here) in cold cores, whereas chemical desorption is still required at smaller densities. Additional works are needed on both mechanisms to assess their efficiency with respect to the main ice composition.
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Wang, Y., Boyer, A. - G., Sauriat-Dorizon, H., Duverger, E., & Riedel, D. (2021). Electronic Structure and Bistable Conformational Study of the Tetraphenylporphyrin Erbium(III) Acetylacetonate Complex on the CaF2/Si(100) Surface at Low Temperatures. J. Phys. Chem. C, 125(26), 14453–14460.
Résumé: The synthesis of tetraphenylporphyrin erbium(III) acetylacetonate (acac) complexes is realized and their properties studied at the nanoscale when adsorbed on a semi-insulating CaF2/Si(100) surface. Our findings reveal that the ErTPP-(acac) molecules can adsorb in two main on-site conformations. Following precisely located dI/dV measurements at various specific positions [phenyls, pyrroles, and Er-(acac)], the relative locations of the Er cation and the apical ligand (acac) can be deciphered for each observed conformation. Hence, one of the adsorbate conformations presents the acac ligand parallel to the porphyrin plane with the Er atom outside the macrocycle plane. The second conformation is related to what is known in the gas phase, where the acac ligand is oriented vertically on top of the Er atom. This work is combined with a theoretical investigation that uses density functional theory methods to bring into light details of the two observed conformations. Additional proofs of our discoveries are related to the vibrational excitations of ErTPP-(acac). A comparison with a theoretical estimation of the vibrational modes reveals how the electronic resonance near the valence-band edge of the insulting layer is suitable to distinguish between the two adsorbed conformations.
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Yukawa, R., Kobayashi, M., Kanda, T., Shiga, D., Yoshimatsu, K., Ishibashi, S., Minohara, M., Kitamura, M., Horiba, K., Santander-Syro, A. F., & Kumigashira, H. (2021). Resonant tunneling driven metal-insulator transition in double quantum-well structures of strongly correlated oxide. NATURE COMMUNICATIONS, 12, 7070.
Résumé: The metal-insulator transition (MIT), a fascinating phenomenon occurring in some strongly correlated materials, is of central interest in modern condensed-matter physics. Controlling the MIT by external stimuli is a key technological goal for applications in future electronic devices. However, the standard control by means of the field effect, which works extremely well for semiconductor transistors, faces severe difficulties when applied to the MIT. Hence, a radically different approach is needed. Here, we report an MIT induced by resonant tunneling (RT) in double quantum well (QW) structures of strongly correlated oxides. In our structures, two layers of the strongly correlated conductive oxide SrVO(3) (SVO) sandwich a barrier layer of the band insulator SrTiO(3). The top QW is a marginal Mott-insulating SVO layer, while the bottom QW is a metallic SVO layer. Angle-resolved photoemission spectroscopy experiments reveal that the top QW layer becomes metallized when the thickness of the tunneling barrier layer is reduced. An analysis based on band structure calculations indicates that RT between the quantized states of the double QW induces the MIT. Our work opens avenues for realizing the Mott-transistor based on the wave-function engineering of strongly correlated electrons.
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Zhang X, Zhang, Z., Gatti, F., & Zhang, D. H. (2021). Full-dimensional quantum dynamics study of isotope effects for the H2 + NH2/ND2/NHD and H2/D2/HD + NH2 reactions. J Chem Phys, 154, 074301.
Résumé: A full-dimensional quantum dynamical study for the bimolecular reactions of hydrogen molecules with amino radicals for different isotopologues is reported. The nonreactive amino radical is described by two Radau vectors that are very close to the valence bond coordinates. Potential-optimized discrete variable representation basis is used for the vibrational coordinates of the amino radical. Starting from the reaction H2 + NH2, we study the isotope effects for the two reagents separately, i.e., H2 + NH2/ND2/NHD and H2/D2/HD + NH2. The effects of different vibrational mode excitations of the reagents on the reactivities are studied. Physical explanations about the isotope effects are also provided thoroughly including the influence of vibrational energy differences between the different isotopologues and the impact of the tunneling effect.
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Zhang, W., Enriquez, H., Tong, Y., Mayne, A. J., Bendounan, A., Smogunov, A., Dappe, Y. J., Kara, A., Dujardin, G., & Oughaddou, H. (2021). Flat epitaxial quasi-1D phosphorene chains. NATURE COMMUNICATIONS, 12, 5160.
Résumé: The emergence of peculiar phenomena in 1D phosphorene chains (P chains) has been proposed in theoretical studies, notably the Stark and Seebeck effects, room temperature magnetism, and topological phase transitions. Attempts so far to fabricate P chains, using the top-down approach starting from a few layers of bulk black phosphorus, have failed to produce reliably precise control of P chains. We show that molecular beam epitaxy gives a controllable bottom-up approach to grow atomically thin, crystalline 1D flat P chains on a Ag(111) substrate. Scanning tunneling microscopy, angle-resolved photoemission spectroscopy, and density functional theory calculations reveal that the armchair-shaped chains are semiconducting with an intrinsic 1.80 ± 0.20 eV band gap. This could make these P chains an ideal material for opto-electronic devices.
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Actes de Conférences |
Shao, F., Woo, S. Y., Wu, N., Mayne, A. J., Schneider, R., Michaelis, S., Arora, A., Carey, B., Preuß, J., Bratschitsch, R., & Tizei, L. H. G. (2021). Understanding transition metal dichalcogenide absorption line widths in electron energy loss spectroscopy. In MICROSCOPY & MICROANALYSIS (Vol. 27, pp. 1170–1172).
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Tong, Y., Oughaddou, H., Enriquez, H., Kubsky, S., Esaulov, V., & Bendounan, A. (2021). Adsorption of Se on Cu(1 0 0) and formation of two-dimensional copper selenide layer. In MATERIALS TODAY PROCEEDINGS (Vol. 39, pp. 1170–1174).
Résumé: In order to understand the adsorption process of selenium (Se) and Se-based molecules on noble metal surfaces, we report here on the properties of a thin film of Se on Cu(1 0 0) substrate. The deposition was carried out by incubating of a clean Cu(1 0 0) surface into Na2Se solution under controlled conditions. The film properties were analysed as a function of the annealing temperature of the sample, using Low Energy Electron Diffraction (LEED) and photoemission techniques. A progressive structural transition from disordered thick layer to a two-dimensional Copper Selenide CuSe thin layer is obtained upon the thermal treatment. Our study proves that a large scale, well-ordered, and highly-stabilized metal chalcogenide layer can be produced for promising use in potential applications.
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Zhang, W., Enriquez, H., Mayne, A. J., Bendounan, A., Seitsonen, A. P., Kara, A., Dujardin, G., & Oughaddou, H. (2021). First steps of blue phosphorene growth on Au(1 1 1). In MATERIALS TODAY PROCEEDINGS (Vol. 39, pp. 1153–1156).
Résumé: Blue phosphorene (blue-P) has attracted considerable attention due to its potential applications in optical and electronic devices. However, its synthesis has remained a challenge. Here, we report an experimental investigation of the first steps of blue-P growth on Au(1 1 1) surface by molecular-beam epitaxy. The structure was characterized by in situ low temperature scanning tunneling microscopy, low-energy electron diffraction, combined with density functional theory calculations. We reveal two-dimensional (2D) phosphorus clusters (P-clusters) formed on surface at 150 °C, where the most prevalent structure of P-clusters is composed of triangles with six protrusions. We also demonstrate the transformation of these P-clusters into a single layer of blue-P after post-annealing at 260 °C. Our observation of the growth process is a necessary step for exploring the growth mechanisms further.
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Monographies |
Hartmann, J. - M., Boulet, C., & Robert, D. (2021). Collisional Effects on Molecular Spectra-2nd Edition-Laboratory Experiments and Models, Consequences for Applications. Elsevier.
Résumé: Gas phase molecular spectroscopy is a powerful tool for obtaining information on the geometry and internal structure of isolated molecules and their interactions with others. It enables the understanding and description, through measurements and modeling, of the influence of pressure on light absorption, emission, and scattering by gas molecules, which must be taken into account for the correct analysis and prediction of the resulting spectra. Collisional Effects on Molecular Spectra: Laboratory Experiments and Models, Consequences for Applications, Second Edition provides an updated review of current experimental techniques, theoretical knowledge, and practical applications.
After an introduction to collisional effects on molecular spectra, the book moves on by taking a threefold approach: it highlights key models, reviews available data, and discusses the consequences for applications. These include areas such as heat transfer, remote sensing, optical sounding, metrology, probing of gas media, and climate predictions. This second edition also contains, with respect to the first one, significant amounts of new information, including 23 figures, 8 tables, and around 700 references.
Drawing on the extensive experience of its expert authors, Collisional Effects on Molecular Spectra: Laboratory Experiments and Models, Consequences for Applications, Second Edition, is a valuable guide for all those involved with sourcing, researching, interpreting, or applying gas phase molecular spectroscopy techniques across a range of fields
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Orre T, Joly A, Karatas, Z., Kastberger, B., Cabriel, C., Bottcher RT, Leveque-Fort S, Sibarita, J. - B., Fassler R, Wehrle-Haller B, Rossier, O., & Giannone G. (2021). Molecular motion and tridimensional nanoscale localization of kindlin control integrin activation in focal adhesions. (Vol. 12).
Résumé: Focal adhesions (FAs) initiate chemical and mechanical signals involved in cell polarity, migration, proliferation and differentiation. Super-resolution microscopy revealed that FAs are organized at the nanoscale into functional layers from the lower plasma membrane to the upper actin cytoskeleton. Yet, how FAs proteins are guided into specific nano-layers to promote interaction with given targets is unknown. Using single protein tracking, super-resolution microscopy and functional assays, we link the molecular behavior and 3D nanoscale localization of kindlin with its function in integrin activation inside FAs. We show that immobilization of integrins in FAs depends on interaction with kindlin. Unlike talin, kindlin displays free diffusion along the plasma membrane outside and inside FAs. We demonstrate that the kindlin Pleckstrin Homology domain promotes membrane diffusion and localization to the membrane-proximal integrin nano-layer, necessary for kindlin enrichment and function in FAs. Using kindlin-deficient cells, we show that kindlin membrane localization and diffusion are crucial for integrin activation, cell spreading and FAs formation. Thus, kindlin uses a different route than talin to reach and activate integrins, providing a possible molecular basis for their complementarity during integrin activation.
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Porcino M, Li, X., Gref R, & Martineau-Corcos C. (2021). Solid-State NMR Spectroscopy: A Key Tool to Unravel the Supramolecular Structure of Drug Delivery Systems..
Résumé: In the past decades, nanosized drug delivery systems (DDS) have been extensively developed and studied as a promising way to improve the performance of a drug and reduce its undesirable side effects. DDSs are usually very complex supramolecular assemblies made of a core that contains the active substance(s) and ensures a controlled release, which is surrounded by a corona that stabilizes the particles and ensures the delivery to the targeted cells. To optimize the design of engineered DDSs, it is essential to gain a comprehensive understanding of these core-shell assemblies at the atomic level. In this review, we illustrate how solid-state nuclear magnetic resonance (ssNMR) spectroscopy has become an essential tool in DDS design.
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Siyu He, L. W., Xue Li, Hongyu Sun, Ting Xiong, Jie Liu, Chengxi Huang, Huipeng Xu, Huimin Sun, Weidong Chen, Ruxandra Gref, Jiwen Zhang. (2021). Metal-organic frameworks for advanced drug delivery..
Résumé: Metal-organic frameworks (MOFs), comprised of organic ligands and metal ions/metal clusters via coordinative bonds are highly porous, crystalline materials. Their tunable porosity, chemical composition, size and shape, and easy surface functionalization make this large family more and more popular for drug delivery. There is a growing interest over the last decades in the design of engineered MOFs with controlled sizes for a variety of biomedical applications. This article presents an overall review and perspectives of MOFs-based drug delivery systems (DDSs), starting with the MOFs classification adapted for DDSs based on the types of constituting metals and ligands. Then, the synthesis and characterization of MOFs for DDSs are developed, followed by the drug loading strategies, applications, biopharmaceutics and quality control. Importantly, a variety of representative applications of MOFs are detailed from a point of view of applications in pharmaceutics, diseases therapy and advanced DDSs. In particular, the biopharmaceutics and quality control of MOFs-based DDSs are summarized with critical issues to be addressed. Finally, challenges in MOFs development for DDSs are discussed, such as biostability, biosafety, biopharmaceutics and nomenclature.
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